Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR5855102-SRR5855103/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                  
Sequenced Read Pairs:  130,407,222
 Normal Paired: 108,342,222 (83.08%)
 Chimeric Paired: 4,238 (0.00%)
 Chimeric Ambiguous: 8,656 (0.01%)
 Unmapped: 22,052,106 (16.91%)
 Ligation Motif Present: 16,951 (0.01%)
Alignable (Normal+Chimeric Paired): 108,346,460 (83.08%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-03T21:03:53,771]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 92,383,309 (70.84%)
PCR Duplicates: 15,963,151 (12.24%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 330,609,465
Intra-fragment Reads: 13,149,236 (10.08% / 14.23%)
Below MAPQ Threshold: 17,846,085 (13.68% / 19.32%)
Hi-C Contacts: 61,387,988 (47.07% / 66.45%)
 Ligation Motif Present: 10,076  (0.01% / 0.01%)
 3' Bias (Long Range): 50% - 50%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 12,727,631  (9.76% / 13.78%)
Intra-chromosomal: 48,660,357  (37.31% / 52.67%)
Short Range (<20Kb): 10,781,806  (8.27% / 11.67%)
Long Range (>20Kb): 37,878,516  (29.05% / 41.00%)